GrainGenes Marker Report: k06212
Locus
k06212
Type
CAPS
Chromosome
7H
Map
Hv-HNxH602-7H 167.4
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaAK26G13
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AseI SNP = C/T SNP structure (UNICODE) = CAAGACCGAAYTAATCTTGCT Parent 1 SNP sequence = CAAGACCGAACTAATCTTGCT Parent 2 SNP sequence = CAAGACCGAATTAATCTTGCT Recognized sequence for CAPs locus = ATTAAT
Probe for Locus
BaAK26G13
Locus
k06212
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = bundle sheath defective protein 2 [Zea mays]
Type
PCR
PCR primers
Left 5' - CATTTCCTGCGTCATCCTTT
Right 5' - GCTGGATTTTTCCTGGTTCA
Sequence
BJ457145
PCR size
255
GrainGenes Marker Report: k06212
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