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GrainGenes Marker Report: k06275

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Locus	k06275
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 66.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK43H20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = FokI SNP = T/C SNP structure (UNICODE) = TCTGACCATCYTCAGCAGTCT Parent 1 SNP sequence = TCTGACCATCTTCAGCAGTCT Parent 2 SNP sequence = TCTGACCATCCTCAGCAGTCT Recognized sequence for CAPs locus = NNNNNNNNNNNNNCATCC
Probe for Locus	BaAK43H20
Locus	k06275
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0434B04.11 [Oryza sativa (japonica cultivar-group)] dbj BAB43990.1 P0434B04.11 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAAGGTTACAATGGTGTGCG Right 5' - GATCAAAGGACGTTGGCAAT
Sequence	BJ461080
PCR size	259