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GrainGenes Marker Report: k06288

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Locus	k06288
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 151
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK27E07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = Cfr13I SNP = T/C SNP structure (UNICODE) = CTACATGGGCYAGCCAAGAAG Parent 1 SNP sequence = CTACATGGGCTAGCCAAGAAG Parent 2 SNP sequence = CTACATGGGCCAGCCAAGAAG Recognized sequence for CAPs locus = GGNCC
Probe for Locus	BaAK27E07
Locus	k06288
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - ATAGCTATGGCACGATTGGC Right 5' - TGACACCGCTGAAGAGATTG
Sequence	BJ457341
PCR size	262