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GrainGenes Marker Report: k06292

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Locus	k06292
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 213.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK25L01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HaeII SNP = G/A SNP structure (UNICODE) = CGGCACCGGCRCCGTGTGCCG Parent 1 SNP sequence = CGGCACCGGCGCCGTGTGCCG Parent 2 SNP sequence = CGGCACCGGCACCGTGTGCCG Recognized sequence for CAPs locus = RGCGCY
Probe for Locus	BaAK25L01
Locus	k06292
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = low temperature induced protein [Hordeum vulgare]
Type	PCR
PCR primers	Left 5' - TGTACCCCACTTGCAATGAA Right 5' - CTCCAGCCTGAGAAGTTTGG
Sequence	BJ456996
PCR size	364