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GrainGenes Marker Report: k06294

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Locus	k06294
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 65.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK26A03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = C/T SNP structure (UNICODE) = AAAGAATGAAYCAGTTTTTCC Parent 1 SNP sequence = AAAGAATGAACCAGTTTTTCC Parent 2 SNP sequence = AAAGAATGAATCAGTTTTTCC Recognized sequence for CAPs locus = GANTC
Probe for Locus	BaAK26A03
Locus	k06294
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TGGGAATCCCTCAGTACAGG Right 5' - AACAATGCCAAGGGTGCTAC
Sequence	BJ457051
PCR size	365