GrainGenes Marker Report: k06295
Locus
k06295
Type
CAPS
Chromosome
5H
Map
Hv-HNxH602-5H 228.5
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaAK14G11
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DraI SNP = C/T SNP structure (UNICODE) = TACATTCGTTYAAAAATTCTT Parent 1 SNP sequence = TACATTCGTTCAAAAATTCTT Parent 2 SNP sequence = TACATTCGTTTAAAAATTCTT Recognized sequence for CAPs locus = TTTAAA
Probe for Locus
BaAK14G11
Locus
k06295
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative indole-3-glycerol phosphate lyase [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - GTACCATTAGCTGCCCCAAA
Right 5' - GGCATGCTCTTCGAGTTTTC
Sequence
BJ454689
PCR size
367
GrainGenes Marker Report: k06295
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