Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k06319

[Submit comment/correction]

Locus	k06319
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 206
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK20K23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/T SNP structure (UNICODE) = GGAATTTATGYGGCTGCGCTA Parent 1 SNP sequence = GGAATTTATGCGGCTGCGCTA Parent 2 SNP sequence = GGAATTTATGTGGCTGCGCTA SNP = G/A SNP structure (UNICODE) = CATCCTGCAARCAGTGTTGAC Parent 1 SNP sequence = CATCCTGCAAGCAGTGTTGAC Parent 2 SNP sequence = CATCCTGCAAACAGTGTTGAC
Probe for Locus	BaAK20K23
Locus	k06319
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OTU-like cysteine protease family protein [Arabidopsis thaliana] ref NP_850716.1 OTU-like cysteine protease family protein [Arabidopsis tha
Type	PCR
PCR primers	Left 5' - GCTATAGGCAGAAACGACGG Right 5' - CTGCAGCTACTCAGCTCGTG
Sequence	BJ456359
PCR size	367