GrainGenes Marker Report: k06332
Locus
k06332
Type
CAPS
Chromosome
2H
Map
Hv-HNxH602-2H 134.9
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaAK29E10
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = C/T SNP structure (UNICODE) = CCGCGTTGCGYTGGAACTCGA Parent 1 SNP sequence = CCGCGTTGCGCTGGAACTCGA Parent 2 SNP sequence = CCGCGTTGCGTTGGAACTCGA Recognized sequence for CAPs locus = GCGC
Probe for Locus
BaAK29E10
Locus
k06332
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = light-harvesting complex IIa protein;
Type
PCR
PCR primers
Left 5' - ACCAAATAGGGCTTCCGTCT
Right 5' - GGTGATCACTGGCTTGGAAT
Sequence
BJ544911
PCR size
368
GrainGenes Marker Report: k06332
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