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GrainGenes Marker Report: k06334

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Locus	k06334
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 155.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK23E14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = A/G SNP structure (UNICODE) = GATTCTTCTCRATCTGACGGA Parent 1 SNP sequence = GATTCTTCTCAATCTGACGGA Parent 2 SNP sequence = GATTCTTCTCGATCTGACGGA Recognized sequence for CAPs locus = TCGA
Probe for Locus	BaAK23E14
Locus	k06334
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OJ990528_30.1 [Oryza sativa (japonica cultivar-group)] emb CAE02496.2 OSJNBa0076N16.22 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGTTCTGCATCTGGGAGAAA Right 5' - GGGCAGAAACTGGAAGTGAA
Sequence	BJ456749
PCR size	371