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GrainGenes Marker Report: k06376

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Locus	k06376
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 217.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK14F03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DdeI SNP = C/T SNP structure (UNICODE) = ATATATGAAAYTGAGACGACC Parent 1 SNP sequence = ATATATGAAACTGAGACGACC Parent 2 SNP sequence = ATATATGAAATTGAGACGACC Recognized sequence for CAPs locus = CTNAG
Probe for Locus	BaAK14F03
Locus	k06376
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0084K11.11 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCGATGAGAACTTTCCAAGC Right 5' - CAAGCAACATAGCAGGAGCA
Sequence	BJ454668
PCR size	365