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GrainGenes Marker Report: k06399

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Locus	k06399
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 213.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK42J01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/A SNP structure (UNICODE) = CCAGCTGGACMCAGTGCTTAG Parent 1 SNP sequence = CCAGCTGGACCCAGTGCTTAG Parent 2 SNP sequence = CCAGCTGGACACAGTGCTTAG SNP = A/C SNP structure (UNICODE) = ACAAATAGACMCATGATTTAG Parent 1 SNP sequence = ACAAATAGACACATGATTTAG Parent 2 SNP sequence = ACAAATAGACCCATGATTTAG
Probe for Locus	BaAK42J01
Locus	k06399
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0434C04.16 [Oryza sativa (japonica cultivar-group)] dbj BAB90181.1 P0408G07.27 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAAGTACTCGCACATGCGTT Right 5' - CCTTCCATTCTTGGTCCTCA
Sequence	BJ460871
PCR size	420