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GrainGenes Marker Report: k06416

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Locus	k06416
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 181.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK1N06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = XspI SNP = C/T SNP structure (UNICODE) = CAATTGCATCYTAGTTAGCCG Parent 1 SNP sequence = CAATTGCATCCTAGTTAGCCG Parent 2 SNP sequence = CAATTGCATCTTAGTTAGCCG Recognized sequence for CAPs locus = CTAG
Probe for Locus	BaAK1N06
Locus	k06416
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = betaine aldehyde dehydrogenase [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - GACTTCTCCTTCGCCCTCTT Right 5' - AGGCCTCGTTAACGTCGTAG
Sequence	AV832590
PCR size	439