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GrainGenes Marker Report: k06430

Locus	k06430
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 280.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK42L17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = C/G SNP structure (UNICODE) = CCCTGTGGCGSGTCTCCTGCT Parent 1 SNP sequence = CCCTGTGGCGCGTCTCCTGCT Parent 2 SNP sequence = CCCTGTGGCGGGTCTCCTGCT Recognized sequence for CAPs locus = GCGC
Probe for Locus	BaAK42L17
Locus	k06430
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0033G05.2 [Oryza sativa (japonica cultivar-group)] emb CAE05975.2 OSJNBa0063C18.16 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGGAGAAAATTCAACTGCCA Right 5' - TCTCAACAGGGGAATATCGG
Sequence	BJ460913
PCR size	451