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GrainGenes Marker Report: k06507

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Locus	k06507
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 155.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK23L23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AvaI SNP = C/T SNP structure (UNICODE) = TCGGATATCCYGGGTAACCAA Parent 1 SNP sequence = TCGGATATCCCGGGTAACCAA Parent 2 SNP sequence = TCGGATATCCTGGGTAACCAA Recognized sequence for CAPs locus = CYCGRG
Probe for Locus	BaAK23L23
Locus	k06507
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = helix-loop-helix-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GAGAGGCCACGTCAATCAAT Right 5' - AAGTTTGGGTCCCCAGTTCT
Sequence	BJ456839
PCR size	355