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GrainGenes Marker Report: k06529

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Locus	k06529
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 74.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK46M16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = A/C SNP structure (UNICODE) = AACTATGCACMCAACATATAA Parent 1 SNP sequence = AACTATGCACACAACATATAA Parent 2 SNP sequence = AACTATGCACCCAACATATAA SNP structure (UNICODE) = TTTATTCTATMAGGCTAGATG Parent 1 SNP sequence = TTTATTCTATAAGGCTAGATG Parent 2 SNP sequence = TTTATTCTATCAGGCTAGATG SNP = C/A SNP structure (UNICODE) = AACAGCAGCAMAACTAATCAC Parent 1 SNP sequence = AACAGCAGCACAACTAATCAC Parent 2 SNP sequence = AACAGCAGCAAAACTAATCAC
Probe for Locus	BaAK46M16
Locus	k06529
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative ribosomal protein S29 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCGACGTTTAGAACGGGTAA Right 5' - AACGTCAAGTCAAGCGTGTG
Sequence	BJ461796
PCR size	353