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GrainGenes Marker Report: k06539

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Locus
k06539
Type
CAPS
Chromosome
7H
Map
Hv-HNxH602-7H149.9
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare
Hordeum vulgare subsp. spontaneum
Probe
BaAK14F01
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
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Restriction enzyme used for CAPS analysis = SacII
SNP = G/C
SNP structure (UNICODE) = TTCAAACATCSGCGGAAGATT
Parent 1 SNP sequence = TTCAAACATCGGCGGAAGATT
Parent 2 SNP sequence = TTCAAACATCCGCGGAAGATT
Recognized sequence for CAPs locus = CCGCGG



Probe for Locus
BaAK14F01
Locus
k06539
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = protein kinase family protein [Arabidopsis thaliana] gb AAO22581.1 putative protein kinase [Arabidopsis thaliana]
Type
PCR
PCR primers
Left 5' - ACCTCAAGCAAACTGCAACC
Right 5' - GAAAGTGCGTGAGGAGAAGC
Sequence
BU992160
PCR size
361