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GrainGenes Marker Report: k06557

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Locus	k06557
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 182
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK20O17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/C SNP structure (UNICODE) = ACTGCCCTCCSTCCTTTTACG Parent 1 SNP sequence = ACTGCCCTCCGTCCTTTTACG Parent 2 SNP sequence = ACTGCCCTCCCTCCTTTTACG SNP = G/A SNP structure (UNICODE) = GGAGTAGTTTRCAACACTGCC Parent 1 SNP sequence = GGAGTAGTTTGCAACACTGCC Parent 2 SNP sequence = GGAGTAGTTTACAACACTGCC SNP = T/G SNP structure (UNICODE) = ATTTCTAAAAKGTCTTATATT Parent 1 SNP sequence = ATTTCTAAAATGTCTTATATT Parent 2 SNP sequence = ATTTCTAAAAGGTCTTATATT
Probe for Locus	BaAK20O17
Locus	k06557
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0011J08.5 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TAGAGGTGTTACCAACGCCC Right 5' - AGAAGCGCAAGACCATCAAC
Sequence	BJ456420
PCR size	357