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GrainGenes Marker Report: k06582

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Locus	k06582
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 260.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK31G07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MboI SNP = T/C SNP structure (UNICODE) = CATCAGAGATYGCAGGAACCT Parent 1 SNP sequence = CATCAGAGATTGCAGGAACCT Parent 2 SNP sequence = CATCAGAGATCGCAGGAACCT Recognized sequence for CAPs locus = GATC
Probe for Locus	BaAK31G07
Locus	k06582
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative organic solute transporter [Oryza sativa] gb AAL79756.1 putative organic solute transporter [Oryza sativa]
Type	PCR
PCR primers	Left 5' - AAGATCATTGGCTTTGTGCC Right 5' - ATGTTCACCCCTTCAAGTGC
Sequence	BJ458277
PCR size	274