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GrainGenes Marker Report: k06608

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Locus	k06608
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 155.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK40I03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = C/T SNP structure (UNICODE) = CACAATGATTYTATTTTAAAA Parent 1 SNP sequence = CACAATGATTCTATTTTAAAA Parent 2 SNP sequence = CACAATGATTTTATTTTAAAA Recognized sequence for CAPs locus = GANTC
Probe for Locus	BaAK40I03
Locus	k06608
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0067K08.9 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AATCGGCTGATACAACCCAC Right 5' - ATCCTCGACATCAAGAACCG
Sequence	BJ546404
PCR size	280