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GrainGenes Marker Report: k06647

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Locus	k06647
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 96.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK46M07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = A/G SNP structure (UNICODE) = ACAAAACTGGRATTAGAATGT Parent 1 SNP sequence = ACAAAACTGGAATTAGAATGT Parent 2 SNP sequence = ACAAAACTGGGATTAGAATGT SNP = G/C SNP structure (UNICODE) = CTAGACCGCTSATCTCAGTTT Parent 1 SNP sequence = CTAGACCGCTGATCTCAGTTT Parent 2 SNP sequence = CTAGACCGCTCATCTCAGTTT SNP = C/A SNP structure (UNICODE) = TCTTCTGTTCMATGACCGCCT Parent 1 SNP sequence = TCTTCTGTTCCATGACCGCCT Parent 2 SNP sequence = TCTTCTGTTCAATGACCGCCT SNP = T/A SNP structure (UNICODE) = TGGAGAAGCCWGTTCACTATG Parent 1 SNP sequence = TGGAGAAGCCTGTTCACTATG Parent 2 SNP sequence = TGGAGAAGCCAGTTCACTATG
Probe for Locus	BaAK46M07
Locus	k06647
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Glutamyl-tRNA reductase 3, chloroplast precursor (GluTR) pir T04402 probable glutamyl-tRNA reductase (EC 1.2.1.-) - barley
Type	PCR
PCR primers	Left 5' - AGGATAGACATGAAACGCCG Right 5' - CATCATGGGAACACCTTGTG
Sequence	BJ461791
PCR size	293