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GrainGenes Marker Report: k06654

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Locus	k06654
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 133.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK29K06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = G/T SNP structure (UNICODE) = GCTGGGTGCAKGGAGTGATGA Parent 1 SNP sequence = GCTGGGTGCAGGGAGTGATGA Parent 2 SNP sequence = GCTGGGTGCATGGAGTGATGA SNP = A/C SNP structure (UNICODE) = TGTAGATAGCMTGGACATGAG Parent 1 SNP sequence = TGTAGATAGCATGGACATGAG Parent 2 SNP sequence = TGTAGATAGCCTGGACATGAG SNP = G/A SNP structure (UNICODE) = TTGTGGTTATRGAGATGGTGG Parent 1 SNP sequence = TTGTGGTTATGGAGATGGTGG Parent 2 SNP sequence = TTGTGGTTATAGAGATGGTGG SNP structure (UNICODE) = ATGACATGAAKAGGAGCAATT Parent 1 SNP sequence = ATGACATGAAGAGGAGCAATT Parent 2 SNP sequence = ATGACATGAATAGGAGCAATT SNP = A/G SNP structure (UNICODE) = CTAGGAAAATRAATGGGGAAC Parent 1 SNP sequence = CTAGGAAAATAAATGGGGAAC Parent 2 SNP sequence = CTAGGAAAATGAATGGGGAAC
Probe for Locus	BaAK29K06
Locus	k06654
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ARP protein - Arabidopsis thaliana emb CAA89858.1 ARP protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CATTTCTAAGATTTCGCGGG Right 5' - TCGAGCTCCCAAAGAAAGAA
Sequence	BJ457863
PCR size	277