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GrainGenes Marker Report: k06761

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Locus	k06761
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 102.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK39I07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BcnI SNP = A/G SNP structure (UNICODE) = TTGTGCTACCRGGCTTGAATA Parent 1 SNP sequence = TTGTGCTACCAGGCTTGAATA Parent 2 SNP sequence = TTGTGCTACCGGGCTTGAATA Recognized sequence for CAPs locus = CCSGG
Probe for Locus	BaAK39I07
Locus	k06761
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative root hair defective 3 (RHD3) [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTTACACGCTGCTGGTGCT Right 5' - GATCTGCACCTGCATGGAC
Sequence	BJ460112
PCR size	394