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GrainGenes Marker Report: k06793

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Locus	k06793
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 9.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK18M22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = T/C SNP structure (UNICODE) = GGAAGTGTGCYTGGGCATTCG Parent 1 SNP sequence = GGAAGTGTGCTTGGGCATTCG Parent 2 SNP sequence = GGAAGTGTGCCTGGGCATTCG SNP = C/G SNP structure (UNICODE) = AAATCATGCASAAGAGGCGAT Parent 1 SNP sequence = AAATCATGCACAAGAGGCGAT Parent 2 SNP sequence = AAATCATGCAGAAGAGGCGAT SNP = A/T SNP structure (UNICODE) = CCCCATGCTCWTGCAGGCATG Parent 1 SNP sequence = CCCCATGCTCATGCAGGCATG Parent 2 SNP sequence = CCCCATGCTCTTGCAGGCATG SNP = A/G SNP structure (UNICODE) = CGGAAGATGCRATGCCGACGC Parent 1 SNP sequence = CGGAAGATGCAATGCCGACGC Parent 2 SNP sequence = CGGAAGATGCGATGCCGACGC
Probe for Locus	BaAK18M22
Locus	k06793
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative homeodomain protein [Oryza sativa] gb AAK00972.1 putative homeodomain protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGCTCCTTTCATCTCACGG Right 5' - GCATGAGCGAACACAAACAC
Sequence	BJ455884
PCR size	374