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GrainGenes Marker Report: k06822

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Locus	k06822
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 118.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK12F18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 22 ] SNP = C/A SNP structure (UNICODE) = AATTCTTAGCMATGAATACAA Parent 1 SNP sequence = AATTCTTAGCCATGAATACAA Parent 2 SNP sequence = AATTCTTAGCAATGAATACAA SNP = A/C SNP structure (UNICODE) = CCTTGGGGTCMATGCCGTCGA Parent 1 SNP sequence = CCTTGGGGTCAATGCCGTCGA Parent 2 SNP sequence = CCTTGGGGTCCATGCCGTCGA SNP structure (UNICODE) = GGTGCAGCCAMGCTGACGCAG Parent 1 SNP sequence = GGTGCAGCCAAGCTGACGCAG Parent 2 SNP sequence = GGTGCAGCCACGCTGACGCAG SNP = A/G SNP structure (UNICODE) = TCTTAAGCGGRGATCTCAACC Parent 1 SNP sequence = TCTTAAGCGGAGATCTCAACC Parent 2 SNP sequence = TCTTAAGCGGGGATCTCAACC SNP structure (UNICODE) = TATAAGTCACRCCATCCCTAA Parent 1 SNP sequence = TATAAGTCACACCATCCCTAA Parent 2 SNP sequence = TATAAGTCACGCCATCCCTAA SNP = G/A SNP structure (UNICODE) = GGGCTAGCATRAGCATACAAT Parent 1 SNP sequence = GGGCTAGCATGAGCATACAAT Parent 2 SNP sequence = GGGCTAGCATAAGCATACAAT
Probe for Locus	BaAK12F18
Locus	k06822
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0093F12.14 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGGAAGTGTTGACTCCCTCA Right 5' - GAAGGTGGTTTCAGCCATGT
Sequence	AV911198
PCR size	379