Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k06842

[Submit comment/correction]

Locus	k06842
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 151
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK32C23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = G/A SNP structure (UNICODE) = CTGGACCATCRATAGACCATA Parent 1 SNP sequence = CTGGACCATCGATAGACCATA Parent 2 SNP sequence = CTGGACCATCAATAGACCATA SNP = C/A SNP structure (UNICODE) = GAATTTCTCAMAGCATACGGT Parent 1 SNP sequence = GAATTTCTCACAGCATACGGT Parent 2 SNP sequence = GAATTTCTCAAAGCATACGGT SNP = C/G SNP structure (UNICODE) = ATGCAGCGTCSGAGGGGTTGG Parent 1 SNP sequence = ATGCAGCGTCCGAGGGGTTGG Parent 2 SNP sequence = ATGCAGCGTCGGAGGGGTTGG SNP = T/C SNP structure (UNICODE) = AATTGTAGTCYCAGAGATGTG Parent 1 SNP sequence = AATTGTAGTCTCAGAGATGTG Parent 2 SNP sequence = AATTGTAGTCCCAGAGATGTG
Probe for Locus	BaAK32C23
Locus	k06842
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Formate dehydrogenase, mitochondrial precursor (NAD-dependent formate dehydrogenase) (FDH)
Type	PCR
PCR primers	Left 5' - TGGTTTTACAAAAGGGCGAG Right 5' - GCTACATCTACTCCAGCGGC
Sequence	BJ458482
PCR size	375