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GrainGenes Marker Report: k06878

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Locus	k06878
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 0
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL21J19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = A/G SNP structure (UNICODE) = GTGTCGACGCRGAACTCGCCG Parent 1 SNP sequence = GTGTCGACGCAGAACTCGCCG Parent 2 SNP sequence = GTGTCGACGCGGAACTCGCCG Recognized sequence for CAPs locus = CGCG
Probe for Locus	BaAL21J19
Locus	k06878
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AACCTCGAAGCTCACGTCAT Right 5' - GGTCGCAATGATTCAACCTT
Sequence	BJ475128
PCR size	360