GrainGenes Marker Report: k06892
Locus
k06892
Type
CAPS
Chromosome
7H
Map
Hv-HNxH602-7H 265
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaAL6J13
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AfaI SNP = T/C SNP structure (UNICODE) = GATCTCACTGYACCGCGAGCC Parent 1 SNP sequence = GATCTCACTGTACCGCGAGCC Parent 2 SNP sequence = GATCTCACTGCACCGCGAGCC Recognized sequence for CAPs locus = GTAC
Probe for Locus
BaAL6J13
Locus
k06892
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = chitinase 2 [Triticum aestivum]
Type
PCR
PCR primers
Left 5' - TAAACACCAGCTCATTCCCA
Right 5' - GCGGCATACACATTCTCCAT
Sequence
AV943485
PCR size
361
GrainGenes Marker Report: k06892
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