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GrainGenes Marker Report: k06898

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Locus	k06898
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 292.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL15F23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/T SNP structure (UNICODE) = GGATGGTCAGYATTTCTGTGC Parent 1 SNP sequence = GGATGGTCAGCATTTCTGTGC Parent 2 SNP sequence = GGATGGTCAGTATTTCTGTGC SNP = C/A SNP structure (UNICODE) = TCATGTCATTMCACTGATGAC Parent 1 SNP sequence = TCATGTCATTCCACTGATGAC Parent 2 SNP sequence = TCATGTCATTACACTGATGAC
Probe for Locus	BaAL15F23
Locus	k06898
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = protein phosphatase 2C [Arabidopsis thaliana] gb AAO44090.1 At3g12620 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TGCCATCATGGATTGCTTTA Right 5' - CGATATGAAATGCCCCACTT
Sequence	BJ473574
PCR size	371