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GrainGenes Marker Report: k06916

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Locus	k06916
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 123.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL2G20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/T SNP structure (UNICODE) = GTAAATATGCWATAATGCTGT Parent 1 SNP sequence = GTAAATATGCAATAATGCTGT Parent 2 SNP sequence = GTAAATATGCTATAATGCTGT SNP = G/A SNP structure (UNICODE) = GCTAATTCAGRTTCACTGTAG Parent 1 SNP sequence = GCTAATTCAGGTTCACTGTAG Parent 2 SNP sequence = GCTAATTCAGATTCACTGTAG
Probe for Locus	BaAL2G20
Locus	k06916
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = contains similarity to endo-1,3-1,4-beta-D-glucanase~gene_id:MDB19.5
Type	PCR
PCR primers	Left 5' - GCGAGTTGGTGAAAGTTGGT Right 5' - ATCGTCTGGATGCAATTGGT
Sequence	AV934980
PCR size	362