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GrainGenes Marker Report: k06937

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Locus	k06937
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 179.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL7B16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = FokI SNP = C/A SNP structure (UNICODE) = CATCAAACATMCATTCCTTCT Parent 1 SNP sequence = CATCAAACATCCATTCCTTCT Parent 2 SNP sequence = CATCAAACATACATTCCTTCT Recognized sequence for CAPs locus = NNNNNNNNNNNNNCATCC
Probe for Locus	BaAL7B16
Locus	k06937
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Sedoheptulose-1,7-bisphosphatase, chloroplast precursor (Sedoheptulose-bisphosphatase) (SBPASE) (SED(1,7)P2ASE)
Type	PCR
PCR primers	Left 5' - ATCTGATGAACCCGAACCAC Right 5' - ATCAACAAGCATCCAGGGAG
Sequence	AL506661
PCR size	359