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GrainGenes Marker Report: k06939

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Locus	k06939
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 26.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL27L20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = G/A SNP structure (UNICODE) = ACCGCTGCAARGGATCCTGCT Parent 1 SNP sequence = ACCGCTGCAAGGGATCCTGCT Parent 2 SNP sequence = ACCGCTGCAAAGGATCCTGCT SNP = T/G SNP structure (UNICODE) = CTCATTTCTGKGACGACCGCT Parent 1 SNP sequence = CTCATTTCTGTGACGACCGCT Parent 2 SNP sequence = CTCATTTCTGGGACGACCGCT SNP = A/G SNP structure (UNICODE) = ATGTCGGTCCRATAAATACTT Parent 1 SNP sequence = ATGTCGGTCCAATAAATACTT Parent 2 SNP sequence = ATGTCGGTCCGATAAATACTT SNP structure (UNICODE) = GAGATTGCACRAAACTACATG Parent 1 SNP sequence = GAGATTGCACAAAACTACATG Parent 2 SNP sequence = GAGATTGCACGAAACTACATG
Probe for Locus	BaAL27L20
Locus	k06939
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0095E20.6 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAACATCGTGGTCATTGGAC Right 5' - CCTTGGAGATACCTGCCTCA
Sequence	BJ475492
PCR size	361