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GrainGenes Marker Report: k06988

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Locus	k06988
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 15.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL30P12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AvaI SNP = G/A SNP structure (UNICODE) = CCTCCTCCTCRGGTGTAAAGT Parent 1 SNP sequence = CCTCCTCCTCGGGTGTAAAGT Parent 2 SNP sequence = CCTCCTCCTCAGGTGTAAAGT Recognized sequence for CAPs locus = CYCGRG
Probe for Locus	BaAL30P12
Locus	k06988
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = UIP2 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TCACGGGACAATTCACAAGA Right 5' - CAAGAAGCACCATTGCAGC
Sequence	CA029674
PCR size	383