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GrainGenes Marker Report: k07006

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Locus	k07006
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 255.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL15N07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = MboI SNP = G/A SNP structure (UNICODE) = AGGCGACAAARATCCACACCA Parent 1 SNP sequence = AGGCGACAAAGATCCACACCA Parent 2 SNP sequence = AGGCGACAAAAATCCACACCA Recognized sequence for CAPs locus = GATC SNP = T/C SNP structure (UNICODE) = AGACTGGTGAYCTGGAGCCGG Parent 1 SNP sequence = AGACTGGTGATCTGGAGCCGG Parent 2 SNP sequence = AGACTGGTGACCTGGAGCCGG
Probe for Locus	BaAL15N07
Locus	k07006
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AACGAGCATACACCCACCTC Right 5' - ACTACTCGGGCACCATGAAC
PCR size	399