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GrainGenes Marker Report: k07026

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Locus	k07026
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 40.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL19L12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = G/A SNP structure (UNICODE) = TCTGCACAGCRCCTGGTTGCT Parent 1 SNP sequence = TCTGCACAGCGCCTGGTTGCT Parent 2 SNP sequence = TCTGCACAGCACCTGGTTGCT Recognized sequence for CAPs locus = GCGC
Probe for Locus	BaAL19L12
Locus	k07026
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = salt-induced AAA-Type ATPase [Mesembryanthemum crystallinum]
Type	PCR
PCR primers	Left 5' - AAGCGGGCTAGTTCTGATGA Right 5' - TGACTACCCCAAGGTGAAGG
Sequence	BJ548138
PCR size	388