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GrainGenes Marker Report: k07042

Locus	k07042
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 177.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL40L16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MboI SNP = A/T SNP structure (UNICODE) = TATACTCCGGWTCTTCATGCT Parent 1 SNP sequence = TATACTCCGGATCTTCATGCT Parent 2 SNP sequence = TATACTCCGGTTCTTCATGCT Recognized sequence for CAPs locus = GATC
Probe for Locus	BaAL40L16
Locus	k07042
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ribulose-phosphate 3-epimerase, chloroplast, putative / pentose-5-phosphate 3-epimerase, putative [Arabidopsis
Type	PCR
PCR primers	Left 5' - GAAAAACCCCAATCACTTGC Right 5' - TGGCAACTTCCCATATCCTC
Sequence	BJ477227
PCR size	400