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GrainGenes Marker Report: k07062

Locus	k07062
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 24.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL19P17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AfaI SNP = A/C SNP structure (UNICODE) = TTCCGCTGTAMCTCGTGGAGC Parent 1 SNP sequence = TTCCGCTGTAACTCGTGGAGC Parent 2 SNP sequence = TTCCGCTGTACCTCGTGGAGC Recognized sequence for CAPs locus = GTAC
Probe for Locus	BaAL19P17
Locus	k07062
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative proton-dependent oligopeptide transport [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TTGAGAGATGTTTGCTCCCA Right 5' - TGATATCACAGCACAAGGCG
Sequence	BJ474285
PCR size	253