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GrainGenes Marker Report: k07067

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Locus	k07067
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 146.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL25O01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = T/C SNP structure (UNICODE) = TTAACATAATYAGAGGATTGA Parent 1 SNP sequence = TTAACATAATTAGAGGATTGA Parent 2 SNP sequence = TTAACATAATCAGAGGATTGA SNP = G/A SNP structure (UNICODE) = AAACAACTAGRTAGTGAAAAC Parent 1 SNP sequence = AAACAACTAGGTAGTGAAAAC Parent 2 SNP sequence = AAACAACTAGATAGTGAAAAC SNP = C/A SNP structure (UNICODE) = TTATCACTGCMCCAGATCCTT Parent 1 SNP sequence = TTATCACTGCCCCAGATCCTT Parent 2 SNP sequence = TTATCACTGCACCAGATCCTT
Probe for Locus	BaAL25O01
Locus	k07067
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein~similar to Arabidopsis thaliana chromosome 3, MSL1.21 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TAACGAAGGAAACCAGCACC Right 5' - GGGAAGTTCATTGCGTTTGT
Sequence	BJ475483
PCR size	269