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GrainGenes Marker Report: k07088

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Locus	k07088
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 137
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL20A14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = SspI SNP = A/G SNP structure (UNICODE) = TAGCACAAATRTTCAAGAATC Parent 1 SNP sequence = TAGCACAAATATTCAAGAATC Parent 2 SNP sequence = TAGCACAAATGTTCAAGAATC Recognized sequence for CAPs locus = AATATT
Probe for Locus	BaAL20A14
Locus	k07088
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative CuZn-superoxide dismutase [Populus tremula x Populus tremuloides]
Type	PCR
PCR primers	Left 5' - TACCACCAAATCCATCCACA Right 5' - AGTTCTGACCATGGGAGCTG
Sequence	BJ474590
PCR size	262