Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k07101

[Submit comment/correction]

Locus	k07101
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 112.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL15B12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = FokI SNP = T/G SNP structure (UNICODE) = TCAAGAAGCAKCCCTGAATAT Parent 1 SNP sequence = TCAAGAAGCATCCCTGAATAT Parent 2 SNP sequence = TCAAGAAGCAGCCCTGAATAT Recognized sequence for CAPs locus = NNNNNNNNNNNNNCATCC
Probe for Locus	BaAL15B12
Locus	k07101
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - CGGAATGAGCAATCACACAC Right 5' - TCAAGGAGTTCGAGCAGGTT
Sequence	BJ477528
PCR size	265