GrainGenes Marker Report: k07151
Locus
k07151
Type
CAPS
Chromosome
6H
Map
Hv-HNxH602-6H 95.8
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaAL23O14
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AvaII SNP = G/C SNP structure (UNICODE) = CCGCAAGGGTSCGACCATCCT Parent 1 SNP sequence = CCGCAAGGGTGCGACCATCCT Parent 2 SNP sequence = CCGCAAGGGTCCGACCATCCT Recognized sequence for CAPs locus = GGWCC
Probe for Locus
BaAL23O14
Locus
k07151
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = polyubiquitin [Pinus sylvestris]
Type
PCR
PCR primers
Left 5' - AATTGAGCCATTGCTTCTGG
Right 5' - CGATGATGGGGAAAGCTAAA
Sequence
BJ461535
PCR size
277
GrainGenes Marker Report: k07151
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