Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k07187

[Submit comment/correction]

Locus	k07187
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 116.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL25A05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 14 ] SNP = A/G SNP structure (UNICODE) = GGTAGTTTATRTGTGCAGCAT Parent 1 SNP sequence = GGTAGTTTATATGTGCAGCAT Parent 2 SNP sequence = GGTAGTTTATGTGTGCAGCAT SNP structure (UNICODE) = AGTGAACCAARTATCATAAAT Parent 1 SNP sequence = AGTGAACCAAATATCATAAAT Parent 2 SNP sequence = AGTGAACCAAGTATCATAAAT SNP = G/A SNP structure (UNICODE) = TCATAAATGARATGGTTTACG Parent 1 SNP sequence = TCATAAATGAGATGGTTTACG Parent 2 SNP sequence = TCATAAATGAAATGGTTTACG SNP structure (UNICODE) = TCGCCTTCTCRGTGTCCTTGT Parent 1 SNP sequence = TCGCCTTCTCAGTGTCCTTGT Parent 2 SNP sequence = TCGCCTTCTCGGTGTCCTTGT
Probe for Locus	BaAL25A05
Locus	k07187
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = metallo-beta-lactamase family protein [Arabidopsis thaliana] gb AAM13147.1 putative protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CTGGTGCCACAACACAATCT Right 5' - AGTGGATATCATGAAGCCCG
Sequence	BJ475338
PCR size	357