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GrainGenes Marker Report: k07229

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Locus	k07229
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 204
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL12F24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MboI SNP = A/G SNP structure (UNICODE) = GAAATCCTCGRTCGGTCCTGG Parent 1 SNP sequence = GAAATCCTCGATCGGTCCTGG Parent 2 SNP sequence = GAAATCCTCGGTCGGTCCTGG Recognized sequence for CAPs locus = GATC
Probe for Locus	BaAL12F24
Locus	k07229
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0013F10.1 [Oryza sativa (japonica cultivar-group)] dbj BAB17056.1 P0013F10.1 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AGGCACAGGCTCTTTTGCTA Right 5' - GAGCCTTGCTACTGAATGGG
Sequence	BJ473417
PCR size	350