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GrainGenes Marker Report: k07236

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Locus	k07236
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 68.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL4D19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AvaI SNP = A/G SNP structure (UNICODE) = TGTTTCTCGGRGCACACCTTG Parent 1 SNP sequence = TGTTTCTCGGAGCACACCTTG Parent 2 SNP sequence = TGTTTCTCGGGGCACACCTTG Recognized sequence for CAPs locus = CYCGRG
Probe for Locus	BaAL4D19
Locus	k07236
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative glycine hydroxymethyltransferase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCTTGAAATGCAGGATGCTC Right 5' - TTCATGGCACAATGGACG
Sequence	BJ486216
PCR size	358