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GrainGenes Marker Report: k07241

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Locus	k07241
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 167.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL16A23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/A SNP structure (UNICODE) = CCTGGAAGCCRTGGAGGTTCA Parent 1 SNP sequence = CCTGGAAGCCGTGGAGGTTCA Parent 2 SNP sequence = CCTGGAAGCCATGGAGGTTCA SNP = C/T SNP structure (UNICODE) = CAGGCTGAAGYGTGTGCGAGG Parent 1 SNP sequence = CAGGCTGAAGCGTGTGCGAGG Parent 2 SNP sequence = CAGGCTGAAGTGTGTGCGAGG
Probe for Locus	BaAL16A23
Locus	k07241
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTTGACGGGCAGATAGGAAG Right 5' - TGTGTTGTTGGGCAGGTCTA
Sequence	BJ552088
PCR size	350