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GrainGenes Marker Report: k07242

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Locus	k07242
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 13.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL39O22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = G/T SNP structure (UNICODE) = AGTTGCGGCAKCGGCAATATG Parent 1 SNP sequence = AGTTGCGGCAGCGGCAATATG Parent 2 SNP sequence = AGTTGCGGCATCGGCAATATG SNP = T/G SNP structure (UNICODE) = AACAGGCGTTKTCTGGTTAGT Parent 1 SNP sequence = AACAGGCGTTTTCTGGTTAGT Parent 2 SNP sequence = AACAGGCGTTGTCTGGTTAGT SNP = A/C SNP structure (UNICODE) = ATTCCAGACAMACATTTTTAT Parent 1 SNP sequence = ATTCCAGACAAACATTTTTAT Parent 2 SNP sequence = ATTCCAGACACACATTTTTAT SNP = A/G SNP structure (UNICODE) = GCCGGGGAATRCAACCATCAG Parent 1 SNP sequence = GCCGGGGAATACAACCATCAG Parent 2 SNP sequence = GCCGGGGAATGCAACCATCAG
Probe for Locus	BaAL39O22
Locus	k07242
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ferredoxin-thioredoxin reductase (EC 1.18.-.-) catalytic chain - maize
Type	PCR
PCR primers	Left 5' - TGGATGCACGCTACTGACTC Right 5' - CAGATCAGGGTGAGCAGGAT
Sequence	BJ548940
PCR size	351