Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k07246

[Submit comment/correction]

Locus	k07246
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 162.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL4L02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = C/T SNP structure (UNICODE) = GCTCGTACTCYGGCGCGGTGT Parent 1 SNP sequence = GCTCGTACTCCGGCGCGGTGT Parent 2 SNP sequence = GCTCGTACTCTGGCGCGGTGT Recognized sequence for CAPs locus = CCGG
Probe for Locus	BaAL4L02
Locus	k07246
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative serine carboxypeptidase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TTGTGCTCGTTTGCAGTTTC Right 5' - TGCTCCCCTCTTTATGGTGA
Sequence	AV935572
PCR size	356