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GrainGenes Marker Report: k07250

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Locus	k07250
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 112.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL3L23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DdeI SNP = C/T SNP structure (UNICODE) = TCCACCTCACYAAGGAATTCA Parent 1 SNP sequence = TCCACCTCACCAAGGAATTCA Parent 2 SNP sequence = TCCACCTCACTAAGGAATTCA Recognized sequence for CAPs locus = CTNAG
Probe for Locus	BaAL3L23
Locus	k07250
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = trehalose-6-phosphate phosphatase (TPPA) [Arabidopsis thaliana] gb AAM13146.1 trehalose-6-phosphate phosphatase [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AAAGTCAACCAACCCAGTGC Right 5' - CGGGATCAGAAGAAATTGGA
Sequence	AV935331
PCR size	413