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GrainGenes Marker Report: k07334

Locus	k07334
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 55.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL26H21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 18 ] SNP = A/G SNP structure (UNICODE) = TGCATCGCTCRTCAAACATGA Parent 1 SNP sequence = TGCATCGCTCATCAAACATGA Parent 2 SNP sequence = TGCATCGCTCGTCAAACATGA SNP = G/C SNP structure (UNICODE) = CACACTGCACSGCAGAAAACT Parent 1 SNP sequence = CACACTGCACGGCAGAAAACT Parent 2 SNP sequence = CACACTGCACCGCAGAAAACT SNP = C/T SNP structure (UNICODE) = CGCCGAAAAGYGTCGCGGCGG Parent 1 SNP sequence = CGCCGAAAAGCGTCGCGGCGG Parent 2 SNP sequence = CGCCGAAAAGTGTCGCGGCGG SNP structure (UNICODE) = CGAGATCTTCYGAAGGGTATA Parent 1 SNP sequence = CGAGATCTTCCGAAGGGTATA Parent 2 SNP sequence = CGAGATCTTCTGAAGGGTATA SNP structure (UNICODE) = AATCCAGACAYCCTAAGACAC Parent 1 SNP sequence = AATCCAGACACCCTAAGACAC Parent 2 SNP sequence = AATCCAGACATCCTAAGACAC
Probe for Locus	BaAL26H21
Locus	k07334
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein [Arabidopsis thaliana] pir T06661 hypothetical protein T6G15.140 - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - CGAGCATATCGACAGCAGAA Right 5' - TCAAGGAGCTCAAGGACCTG
Sequence	CA030723
PCR size	420