Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k07399

[Submit comment/correction]

Locus	k07399
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 231.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baet46C0206
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BcnI SNP = T/C SNP structure (UNICODE) = TGTTGAAGTCYCGGGTGTTGT Parent 1 SNP sequence = TGTTGAAGTCTCGGGTGTTGT Parent 2 SNP sequence = TGTTGAAGTCCCGGGTGTTGT Recognized sequence for CAPs locus = CCSGG
Probe for Locus	baet46C0206
Locus	k07399
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - TCCTGACGGTTGTATCACCA Right 5' - GATGTTGCCGATGCTCTTCT
PCR size	292