Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k07405

[Submit comment/correction]

Locus	k07405
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 260.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baet39B0303
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/C SNP structure (UNICODE) = CCATCTCCGCMTTGGCCCAGT Parent 1 SNP sequence = CCATCTCCGCATTGGCCCAGT Parent 2 SNP sequence = CCATCTCCGCCTTGGCCCAGT SNP = C/T SNP structure (UNICODE) = GCTTTCTTGGYAGGGTAAGGA Parent 1 SNP sequence = GCTTTCTTGGCAGGGTAAGGA Parent 2 SNP sequence = GCTTTCTTGGTAGGGTAAGGA SNP = G/C SNP structure (UNICODE) = CCTCGCCGTCSAGCACGCTGC Parent 1 SNP sequence = CCTCGCCGTCGAGCACGCTGC Parent 2 SNP sequence = CCTCGCCGTCCAGCACGCTGC
Probe for Locus	baet39B0303
Locus	k07405
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Myb-related protein Hv33 pir S31818 myb-related protein 3 - barley
Type	PCR
PCR primers	Left 5' - CGCTTTAGCTCCAAATCAGG Right 5' - ATCGCCGTCTACTGGCTCTA
Sequence	X70881
PCR size	264